Made up of a four-letter DNA code*, genes are the ‘recipes’ cells use to make molecules such as proteins, which are the building blocks of life. Changes in a gene can affect the characteristics of an organism. For example, genetic variations linked to pigmentation genes affect eye or hair colour in humans, while other changes can cause diseases such as cystic fibrosis or cancer. On a grander scale, genetic changes are the fuel for evolution, leading to big and small differences between species over time. Until now, researchers have tended to only study single ‘letter’ changes (mutations) in a gene, Antarctica Email Lists observing the effect of the alteration on the resulting protein. But in real life, organisms have many DNA changes and variations scattered throughout their genes, which can all interact together to affect the outcome.
Now Fyodor Kondrashov, ICREA research professor and leader of the Evolutionary Genomics lab at the Centre for Genomic Regulation (CRG), and his team have scanned through thousands of different versions of a jellyfish gene encoding a Green Fluorescent Protein (GFP)**, analysing the effect of one, two or multiple mutations on the fluorescence levels of the resulting proteins. Their results are published online today (11th May 2016) and on 19th May in the print issue of Nature. Rather than having to examine thousands of jellyfish, the researchers made mutations in a version of the GFP gene that had been transferred into lab bacteria called E. coli, which produce the altered fluorescent protein as they grow. Some changes don’t affect the level of fluorescence of the protein,
while others make it dimmer or get rid of the glow altogether. Thanks to advances in DNA sequencing – the technology that allows scientists to ‘read’ the genetic code – Kondrashov and his team were able to find out exactly what changes had been made within every altered version of the GFP gene and link that back to any changes in fluorescence of the protein. Surprisingly, they found that some combinations of mutations had a more pronounced effect on the fluorescence than might have been predicted from the effect of each single change by itself. Finally, using computer modelling, the researchers were able to construct a ‘fitness landscape’, mapping how multiple combinations of changes in the GFP gene interact to affect the brightness of the resulting protein (see accompanying video*